Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs835647 chr3:136669079 C/T 0.000403 172 20.2 27.82 23.43 KM Plot
PCPG rs856662 chr3:136668625 T/C 0.00044 171 20.2 27.82 23.03 KM Plot
PCPG rs857187 chr5:179420013 T/C 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs857188 chr5:179420113 C/A 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs869477 chr6:123124128 G/A 3.53E-6 177 8.67 27.27 24.85 KM Plot
PCPG rs869478 chr6:123123974 A/T 2.98E-6 176 8.67 27.23 24.85 KM Plot
PCPG rs869479 chr6:123123911 A/G 2.98E-6 176 8.67 27.23 24.85 KM Plot
PCPG rs869480 chr6:123124292 C/T 3.53E-6 177 8.67 27.27 24.85 KM Plot
PCPG rs871130 chr12:56648777 A/G 9.45E-8 178 0.8 27.3 25.17 KM Plot
PCPG rs882311 chr10:1229548 C/T 0.000266 178 21.68 25.97 24.1 KM Plot
PCPG rs883695 chr1:36920727 T/C 7.31E-5 178 25.4 26.62 10.3 KM Plot
PCPG rs884095 chr3:122026494 A/T 8.88E-6 178 24.85 31.9 15.8 KM Plot
PCPG rs885488 chr6:133294795 C/T 0.000101 178 25.17 28.47 15.22 KM Plot
PCPG rs888178 chr2:230493354 A/C 1.41E-8 171 5.18 22.35 25.87 KM Plot
PCPG rs904960 chr10:1229009 G/A 0.000338 174 21.68 25.97 23.53 KM Plot